Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)

Jae Hyeon Jeon; Hyun Seung Park; Jee Young Park; Tae Sun Kang; Kisung Kwon; Yeon Bok Kim; Jong Won Han; Seung Hyun Kim; Sang Hyun Sung; Tae Jin Yang

doi:10.1080/23802359.2018.1545529

Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)

Jae Hyeon Jeon, Hyun Seung Park, Jee Young Park, Tae Sun Kang, Kisung Kwon, Yeon Bok Kim, Jong Won Han, Seung Hyun Kim, Sang Hyun Sung, Tae Jin Yang

Department of Pharmacy

Research output: Contribution to journal › Article › peer-review

10 Citations (Scopus)

Abstract

Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species.

Original language	English
Pages (from-to)	176-177
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	4
Issue number	1
DOIs	https://doi.org/10.1080/23802359.2018.1545529
Publication status	Published - 2019 Jan 2

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© 2019, © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

All Science Journal Classification (ASJC) codes

Molecular Biology
Genetics

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10.1080/23802359.2018.1545529

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abstract = "Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species.",

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AU - Jeon, Jae Hyeon

AU - Park, Hyun Seung

AU - Park, Jee Young

AU - Kang, Tae Sun

AU - Kwon, Kisung

AU - Kim, Yeon Bok

AU - Han, Jong Won

AU - Kim, Seung Hyun

AU - Sung, Sang Hyun

AU - Yang, Tae Jin

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AB - Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species.

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Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)

Abstract

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