Site-Directed Deletion

Da Jung Cho; Yo Sub Han; Hwee Kim; Kai Salomaa

doi:10.1007/978-3-319-98654-8_18

Site-Directed Deletion

Da Jung Cho, Yo Sub Han, Hwee Kim, Kai Salomaa

College of Computing

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Citation (Scopus)

Abstract

We introduce a new bio-inspired operation called a site-directed deletion motivated from site-directed mutagenesis performed by enzymatic activity of DNA polymerase: Given two strings x and y, a site-directed deletion partially deletes a substring of x guided by the string y that specifies which part of a substring can be deleted. We study a few decision problems with respect to the new operation and examine the closure properties of the (iterated) site-directed deletion operations. We, then, define a site-directed deletion-closed (and -free) language L and investigate its decidability properties when L is regular or context-free.

Original language	English
Title of host publication	Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings
Editors	Mizuho Hoshi, Shinnosuke Seki
Publisher	Springer Verlag
Pages	219-230
Number of pages	12
ISBN (Print)	9783319986531
DOIs	https://doi.org/10.1007/978-3-319-98654-8_18
Publication status	Published - 2018
Event	22nd International Conference on Developments in Language Theory, DLT 2018 - Tokyo, Japan Duration: 2018 Sept 10 → 2018 Sept 14

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	11088 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Other

Other	22nd International Conference on Developments in Language Theory, DLT 2018
Country/Territory	Japan
City	Tokyo
Period	18/9/10 → 18/9/14

Bibliographical note

Publisher Copyright:
© 2018, Springer Nature Switzerland AG.

All Science Journal Classification (ASJC) codes

Theoretical Computer Science
General Computer Science

Access to Document

10.1007/978-3-319-98654-8_18

Cite this

Cho, D. J., Han, Y. S., Kim, H., & Salomaa, K. (2018). Site-Directed Deletion. In M. Hoshi, & S. Seki (Eds.), Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings (pp. 219-230). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11088 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-319-98654-8_18

Cho, Da Jung ; Han, Yo Sub ; Kim, Hwee et al. / Site-Directed Deletion. Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings. editor / Mizuho Hoshi ; Shinnosuke Seki. Springer Verlag, 2018. pp. 219-230 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

@inproceedings{516f67c1341048a7b4338268b8cd4b19,

title = "Site-Directed Deletion",

abstract = "We introduce a new bio-inspired operation called a site-directed deletion motivated from site-directed mutagenesis performed by enzymatic activity of DNA polymerase: Given two strings x and y, a site-directed deletion partially deletes a substring of x guided by the string y that specifies which part of a substring can be deleted. We study a few decision problems with respect to the new operation and examine the closure properties of the (iterated) site-directed deletion operations. We, then, define a site-directed deletion-closed (and -free) language L and investigate its decidability properties when L is regular or context-free.",

keywords = "Automata theory, Bio-inspired operations, Closure properties, Decidability, Site-directed deletion",

author = "Cho, {Da Jung} and Han, {Yo Sub} and Hwee Kim and Kai Salomaa",

note = "Publisher Copyright: {\textcopyright} 2018, Springer Nature Switzerland AG.; 22nd International Conference on Developments in Language Theory, DLT 2018 ; Conference date: 10-09-2018 Through 14-09-2018",

year = "2018",

doi = "10.1007/978-3-319-98654-8_18",

language = "English",

isbn = "9783319986531",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

publisher = "Springer Verlag",

pages = "219--230",

editor = "Mizuho Hoshi and Shinnosuke Seki",

booktitle = "Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings",

address = "Germany",

}

Cho, DJ, Han, YS, Kim, H & Salomaa, K 2018, Site-Directed Deletion. in M Hoshi & S Seki (eds), Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 11088 LNCS, Springer Verlag, pp. 219-230, 22nd International Conference on Developments in Language Theory, DLT 2018, Tokyo, Japan, 18/9/10. https://doi.org/10.1007/978-3-319-98654-8_18

Site-Directed Deletion. / Cho, Da Jung; Han, Yo Sub; Kim, Hwee et al.
Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings. ed. / Mizuho Hoshi; Shinnosuke Seki. Springer Verlag, 2018. p. 219-230 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11088 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

TY - GEN

T1 - Site-Directed Deletion

AU - Cho, Da Jung

AU - Han, Yo Sub

AU - Kim, Hwee

AU - Salomaa, Kai

PY - 2018

Y1 - 2018

N2 - We introduce a new bio-inspired operation called a site-directed deletion motivated from site-directed mutagenesis performed by enzymatic activity of DNA polymerase: Given two strings x and y, a site-directed deletion partially deletes a substring of x guided by the string y that specifies which part of a substring can be deleted. We study a few decision problems with respect to the new operation and examine the closure properties of the (iterated) site-directed deletion operations. We, then, define a site-directed deletion-closed (and -free) language L and investigate its decidability properties when L is regular or context-free.

AB - We introduce a new bio-inspired operation called a site-directed deletion motivated from site-directed mutagenesis performed by enzymatic activity of DNA polymerase: Given two strings x and y, a site-directed deletion partially deletes a substring of x guided by the string y that specifies which part of a substring can be deleted. We study a few decision problems with respect to the new operation and examine the closure properties of the (iterated) site-directed deletion operations. We, then, define a site-directed deletion-closed (and -free) language L and investigate its decidability properties when L is regular or context-free.

KW - Automata theory

KW - Bio-inspired operations

KW - Closure properties

KW - Decidability

KW - Site-directed deletion

UR - http://www.scopus.com/inward/record.url?scp=85053863333&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=85053863333&partnerID=8YFLogxK

U2 - 10.1007/978-3-319-98654-8_18

DO - 10.1007/978-3-319-98654-8_18

M3 - Conference contribution

AN - SCOPUS:85053863333

SN - 9783319986531

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 219

EP - 230

BT - Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings

A2 - Hoshi, Mizuho

A2 - Seki, Shinnosuke

PB - Springer Verlag

T2 - 22nd International Conference on Developments in Language Theory, DLT 2018

Y2 - 10 September 2018 through 14 September 2018

ER -

Cho DJ, Han YS, Kim H, Salomaa K. Site-Directed Deletion. In Hoshi M, Seki S, editors, Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings. Springer Verlag. 2018. p. 219-230. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-319-98654-8_18

Site-Directed Deletion

Abstract

Publication series

Other

Bibliographical note

All Science Journal Classification (ASJC) codes

Access to Document

Other files and links

Fingerprint

Cite this