Intrinsic variability of gene expression encoded in nucleosome positioning sequences

Jung Kyoon Choi, Young Joon Kim

Research output: Contribution to journalArticlepeer-review

105 Citations (Scopus)


Variation in gene expression is an essential material for biological diversity among single cells, individuals and populations or species. Here we show that expression variability is an intrinsic property that persists at those different levels. Each promoter seems to have a unique capacity to respond to external signals that can be environmental, genetic or even stochastic. Our investigation into nucleosome organization of variably responding promoters revealed a commonly positioned nucleosome at a critical regulatory region where most transcription start sites and TATA elements are located, a deviation from typical nucleosome-free status. The nucleotide sequences in this region of variable promoters showed a high propensity for DNA bending and a periodic distribution of particular dinucleotides, encoding preferences for DNA-nucleosome interaction. Variable expression is likely to occur during removal of this nucleosome for gene activation. This is a unique example of how promoter sequences intrinsically encode regulatory flexibility, which is vital for biological processes such as adaptation, development and evolution.

Original languageEnglish
Pages (from-to)498-503
Number of pages6
JournalNature Genetics
Issue number4
Publication statusPublished - 2009 Apr

Bibliographical note

Funding Information:
This work was supported by grants from the Korean Ministry of Science and Technology to Y.-J.K. (Epigenomic Research of Human Disease and Global Research Lab).

All Science Journal Classification (ASJC) codes

  • Genetics


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