Fitting accelerated failure time models in routine survival analysis with R package aftgee

Sy Han Chiou, Sangwook Kang, Sangwook Kang

Research output: Contribution to journalArticlepeer-review

29 Citations (Scopus)


Accelerated failure time (AFT) models are alternatives to relative risk models which are used extensively to examine the covariate efiects on event times in censored data regression. Nevertheless, AFT models have been much less utilized in practice due to lack of reliable computing methods and software. This paper describes an R package aft- gee that implements recently developed inference procedures for AFT models with both the rank-based approach and the least squares approach. For the rank-based approach, the package allows various weight choices and uses an induced smoothing procedure that leads to much more eficient computation than the linear programming method. With the rank-based estimator as an initial value, the generalized estimating equation approach is used as an extension of the least squares approach to the multivariate case. Additional sampling weights are incorporated to handle missing data needed as in case-cohort studies or general sampling schemes. A simulated dataset and two real life examples from biomedical research are employed to illustrate the usage of the package.

Original languageEnglish
Pages (from-to)1-23
Number of pages23
JournalJournal of Statistical Software
Issue number11
Publication statusPublished - 2014

Bibliographical note

Publisher Copyright:
© 2014, American Statistical Association. All right reserved.

All Science Journal Classification (ASJC) codes

  • Software
  • Statistics and Probability
  • Statistics, Probability and Uncertainty


Dive into the research topics of 'Fitting accelerated failure time models in routine survival analysis with R package aftgee'. Together they form a unique fingerprint.

Cite this