Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes

Zhi Jiang Zang, Ioana Cutcutache, Song Ling Poon, Shen Li Zhang, John R. Mcpherson, Jiong Tao, Vikneswari Rajasegaran, Hong Lee Heng, Niantao Deng, Anna Gan, Kiat Hon Lim, Choon Kiat Ong, Da Chuan Huang, Sze Yung Chin, Iain Beehuat Tan, Cedric Chuan Young Ng, Willie Yu, Yingting Wu, Minghui Lee, Jeanie WuDianne Poh, Wei Keat Wan, Sun Young Rha, Jimmy So, Manuel Salto-Tellez, Khay Guan Yeoh, Wai Keong Wong, Yi Jun Zhu, P. Andrew Futreal, Brendan Pang, Yijun Ruan, Axel M. Hillmer, Denis Bertrand, Niranjan Nagarajan, Steve Rozen, Bin Tean Teh, Patrick Tan

Research output: Contribution to journalArticlepeer-review

507 Citations (Scopus)


Gastric cancer is a major cause of global cancer mortality. We surveyed the spectrum of somatic alterations in gastric cancer by sequencing the exomes of 15 gastric adenocarcinomas and their matched normal DNAs. Frequently mutated genes in the adenocarcinomas included TP53 (11/15 tumors), PIK3CA (3/15) and ARID1A (3/15). Cell adhesion was the most enriched biological pathway among the frequently mutated genes. A prevalence screening confirmed mutations in FAT4, a cadherin family gene, in 5% of gastric cancers (6/110) and FAT4 genomic deletions in 4% (3/83) of gastric tumors. Frequent mutations in chromatin remodeling genes (ARID1A, MLL3 and MLL) also occurred in 47% of the gastric cancers. We detected ARID1A mutations in 8% of tumors (9/110), which were associated with concurrent PIK3CA mutations and microsatellite instability. In functional assays, we observed both FAT4 and ARID1A to exert tumor-suppressor activity. Somatic inactivation of FAT4 and ARID1A may thus be key tumorigenic events in a subset of gastric cancers.

Original languageEnglish
Pages (from-to)570-574
Number of pages5
JournalNature Genetics
Issue number5
Publication statusPublished - 2012 May

Bibliographical note

Funding Information:
We thank S.T. Tay, K. Ramnarayanan, A. Pandey, Z. Lei, Y. Liu, Y. Suzuki, S. Ramgopal and the Duke–NUS Genome Biology Facility for technical assistance. We also thank AITbiotech for sequencing services. N.D., I.B.T. and W.Y. are recipients of the NUS Graduate School for Integrative Sciences and Engineering Scholarship. This work was supported by funding from the National Medical Research Council (NMRC/ TCR/001/2007 and NMRC/STAR/0006/2009), the Cancer Science Institute of Singapore, the Genome Institute of Singapore, Duke–NUS Graduate Medical School Singapore and The Lee Foundation.

All Science Journal Classification (ASJC) codes

  • Genetics


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