Daptomycin, a last-resort antibiotic, binds ribosomal protein S19 in humans

Michael P. Gotsbacher, Sungmin Cho, Ho Jeong Kwon, Peter Karuso

Research output: Contribution to journalArticlepeer-review

12 Citations (Scopus)


Background: Daptomycin is a recently introduced, last-resort antibiotic that displays a unique mode of action against Gram-positive bacteria that is not fully understood. Several bacterial targets have been proposed but no human binding partner is known. Methods: In the present study we tested daptomycin in cell viability and proliferation assays against six human cell lines, describe the synthesis of biotinylated and fluorescently labeled analogues of daptomycin. Biotinylated daptomycin was used as bait to isolate the human binding partner by the application of reverse chemical proteomics using T7 phage display of five human tumor cDNA libraries. The interaction between the rescued protein and daptomycin was validated via siRNA knockdown, DARTS assay and immunocytochemistry. Results: We have found that daptomycin possesses selective growth inhibition of some cancer cell lines, especially MCF7. The unbiased interrogation of human cDNA libraries, displayed on bacteriophage T7, revealed a single human target of daptomycin; ribosomal protein S19. Using a drug affinity responsive target stability (DARTS) assay in vitro, we show that daptomycin stabilizes RPS19 toward pronase. Fluorescently labeled daptomycin stained specific structures in HeLa cells and co-localized with a RPS19 antibody. Conclusion: This study provides, for the first time, a human protein target of daptomycin and identifies RPS19 as a possible anticancer drug target for the development of new pharmacological applications and research.

Original languageEnglish
Article number16
JournalProteome Science
Issue number1
Publication statusPublished - 2017 Jul 1

Bibliographical note

Funding Information:
This work was supported by ARC grant DP130103281 to P. K. and H. J. K., NRF grant 2015K1A1A2028365, 2015M3A9C4076321 to H. J. K.

Publisher Copyright:
© 2017 The Author(s).

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Molecular Biology


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