“3G” trial: An RNA editing signature to guide gastric cancer chemotherapy

Omer An, Yangyang Song, Xinyu Ke, Jimmy Bok Yan So, Raghav Sundar, Henry Yang, Sun Young Rha, Ming Hui Lee, Su Ting Tay, Xuewen Ong, Angie Lay Keng Tan, Matthew Chau Hsien Ng, Erwin Tantoso, Leilei Chen, Patrick Tan, Wei Peng Yong

Research output: Contribution to journalArticlepeer-review

9 Citations (Scopus)


Gastric cancer cases are often diagnosed at an advanced stage with poor prognosis. Platinum-based chemotherapy has been internationally accepted as first-line therapy for inoperable or metastatic gastric cancer. To achieve greater benefits, selection of patients eligible for this treatment is critical. Although gene expression profiling has been widely used as a genomic classifier to identify molecular subtypes of gastric cancer and to stratify patients for different chemotherapy regimens, its prediction accuracy can be improved. Adenosine-to-inosine (A-to-I) RNA editing has emerged as a new player contributing to gastric cancer development and progression, offering potential clinical utility for diagnosis and treatment. Using a systematic computational approach followed by both in vitro validations and in silico validations in The Cancer Genome Atlas (TCGA), we conducted a transcriptome-wide RNA editing analysis of a cohort of 104 patients with advanced gastric cancer and identified an RNA editing (GCRE) signature to guide gastric cancer chemotherapy. RNA editing events stood as a prognostic and predictive biomarker in advanced gastric cancer. A GCRE score based on the GCRE signature consisted of 50 editing sites associated with 29 genes, predicting response to chemotherapy with a high accuracy (84%). Of note, patients demonstrating higher editing levels of this panel of sites presented a better overall response. Consistently, gastric cancer cell lines with higher editing levels showed higher chemosensitivity. Applying the GCRE score on TCGA dataset confirmed that responders had significantly higher levels of editing in advanced gastric cancer. Overall, this newly defined GCRE signature reliably stratifies patients with advanced gastric cancer and predicts response from chemotherapy. Significance: This study describes a novel A-to-I RNA editing signature as a prognostic and predictive biomarker in advanced gastric cancer, providing a new tool to improve patient stratification and response to therapy.

Original languageEnglish
Pages (from-to)2788-2798
Number of pages11
JournalCancer Research
Issue number10
Publication statusPublished - 2021 May

Bibliographical note

Funding Information:
The authors greatly thank the patients and their families for participating in the clinical trial and for contributing tissue magnanimously to the biomarker study. This work was supported by the National Research Foundation Singapore under its Translational and Clinical Research (TCR) Flagship Programme grant, administered by the Singapore Ministry of Health’s National Medical Research Council and awarded to the Singapore Gastric Cancer Consortium (SGCC). This research was also supported by National Research Foundation Singapore; Singapore Ministry of Education under its Research Centres of Excellence initiative; the RNA Biology Centre at Cancer Science Institute of Singapore, NUS, under the National Research Foundation Singapore’s and the Singapore Ministry of Education’s Research Centres of Excellence initiative Tier 2 grants MOE2018-T2-1-005, MOE2019-T2-2-008; Tier 3 grant MOE2014-T3-1-006 and National Medical Research Council (NMRC) Clinician Scientist-Individual Research Grant (CSIRG) MOH-CIRG18nov-0007, Project ID: MOH-000214 awarded to L. Chen, as well as a grant from the National R&D Programme for Cancer Control, Ministry of Health and Welfare, Republic of Korea (1520190). R. Sundar is supported by a National Medical Research Council (NMRC) Fellowship (NMRC/Fellowship/0059/2018), Singapore. P. Tan is supported by Duke-NUS Medical School and the Biomedical Research Council, Agency for Science, Technology and Research. This work was also supported by National Medical Research Council grants TCR/009-NUHS/2013, NR13NMR111OM, and NMRC/STaR/0026/2015.

Publisher Copyright:
© 2021 American Association for Cancer Research.

All Science Journal Classification (ASJC) codes

  • Oncology
  • Cancer Research


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